Category: Writing

  • [ANSWERED] One of the reasons that authorship is so important in science is that it helps to establish the…

    One of the reasons that authorship is so important in
    science is that it helps to establish the priority of discoveries and
    inventions. Scientists are rewarded for being the fi rst to make a discovery,
    propose a theory, or develop an invention (Merton 1973). Scientifi c journals
    are usually interested in publishing research that is new and original. The
    patent system (discussed in more detail in chapter 6) awards patents based on
    the originality of the invention. Many episodes in the history of science
    illustrate the importance of priority, including the dispute between Newton and
    Leibniz over the discovery of calculus, the agreement between Charles Darwin
    and Alfred Russell Wallace concerning publication of the theory of natural
    selection, and the race between Watson and Crick, Linus Pauling, Maurice
    Wilkins, and Rosalind Franklin to discover the structure of DNA. In the 1980s,
    a bitter priority dispute erupted concerning the discovery of the HIV virus and
    patents on blood tests for the virus. Two prominent researchers, Luc
    Montagnier, from the Pasteur Institute in France, and Robert Gallo, from the
    National Institutes of Health (NIH), were both trying to isolate the virus that
    causes AIDS, and Montagnier named his strain LAV. Montagnier cultured infected
    immune system cells (T-lymphocytes) from an AIDS patient known as L.A.I.
    Montagnier also had blood samples in his laboratory from an AIDS patient known
    as B.R.U. At the same time, Gallo was attempting to culture T-lymphocytes
    infected with HIV in his laboratory. Gallo named the virus he was working with
    HTLV-IIIb. Both researchers believed they were working with different viral
    strains, and theyexchanged samples. There was a spirit of cooperation among the
    different research groups, at least at fi rst (Hilts 1991). In 1983, Montagnier
    was preparing to submit a paper reporting his discovery of the B.R.U. strain to
    Nature. Montagnier received a call from Gallo, who told him that he was
    preparing to submit a paper to Science on the HTLV-IIIb virus. Gallo convinced
    Montagnier to switch journals, so that both papers would appear in Science.
    Montagnier sent Gallo his paper to submit to Science, but he forgot to write an
    abstract. Gallo wrote the abstract for Montagnier, which stated that Montagnier
    had discovered an HTLV virus strain, which would confi rm Gallo’s work on HTLV.
    Following publication of the two papers, Gallo received top billing for the
    discovery of HIV and Montagnier was largely ignored (Crewdson 2003). In
    addition to publishing papers claiming to discover HIV, both researchers sought
    to patent a test for the virus. The researchers were stunned when genetic tests
    indicated that their viral strains were nearly identical (Hilts 1991).
    Montagnier charged Gallo with misconduct, arguing that Gallo had deliberately
    taken B.R.U. samples and claimed them as his own. This accusation led to a
    misconduct investigation by the NIH and ORI. A U.S. House of Representatives
    committee that oversees the NIH, chaired by John Dingell (D-Mich.), also looked
    into the case. Gallo was eventually cleared of these allegations, though
    Dingell accused the NIH of trying to cover up fraudulent research. The French
    and U.S. governments fought a legal battle concerning patents on the HIV test.
    The two governments eventually reached an out-of-court settlement, signed by
    the presidents of both countries. Under the terms of the agreement, Montagnier
    and Gallo were acknowledged as codiscovers of HIV. The two governments would
    also split the royalties from patents on HIV tests, with 80% of the money
    allocated toward HIV/AIDS research (Hilts 1992). After investigating the
    different strains of HIV and examining their laboratory practices carefully,
    the researchers also agreed that the most likely explanation of the similarity
    between their strains was due to contamination of both strains by the virus
    from the patient known as L.A.I. According to this explanation, the virulent
    L.A.I. virus somehow infected B.R.U. samples in Montagnier’s laboratory.
    Montagnier sent samples of the B.R.U. to Gallo. Gallo began working with the
    samples sent by Montagnier, and the L.A.I. virus also infected the other
    samples that Gallo had in his laboratory. Although they did not know it at the
    time, researchers in both laboratories isolated the exact same strain of the
    virus, because the L.A.I. virus contaminated both strains—LAV and HTLV-IIIb—in
    their different laboratories (Hilts 1991). Montagnier shared the 2008 Nobel
    Prize with two others, not including Gallo. The dispute between Gallo and
    Montagnier had a negative impact on HIV/AIDS research and on the public’s
    acceptance of the hypothesis that HIV causes AIDS. Leaders in some African
    nations openly questioned whether HIV causes AIDS, and some still do.
    • Why do you think that Gallo and Montagnier had such a
    bitter dispute over scientifi c priority?
    • What factors do you think contributed to the controversy?
    • Do you agree with the way the case was handled by the
    scientists and the respective governments?

  • [ANSWERED] A new postdoctoral fellow in a genetic research laboratory must sequence a 4-kDa fragment. After the

    A new postdoctoral fellow in a genetic research laboratory
    must sequence a 4-kDa fragment. After the sequence, he is to prepare a 200-base
    unit to use as a potential regulator of a DNA-related enzyme. The 4-kDa
    fragment is suspected to contain the 200-base unit. The sequence of the
    200-base unit is already known in the literature, but not as part of the 4-kDa
    fragment, and not as a potential regulator. The fact that the 200-base unit is
    known is what gave the mentor the idea that it may have a functional role. The
    new postdoctoral fellow tried for three months to sequence the 4-kDa fragment,
    without success, and so simply proceeded to synthesize the 200-base unit without
    locating it within the fragment. After two years of research, the 4-kDa
    fragment appeared to play a key regulatory role in an important discovery, but
    at this time the mentor learned that the postdoc never sequenced the original
    4-kDa fragment. The mentor could never fi nd a “good” record of the attempts to
    sequence the 4-kDa fragment.
    • What impression do you gather about how this mentor runs
    the laboratory?
    • Should there be records of sequence attempts of the 4-kDa
    fragment?
    • How should the mentor proceed?
    • If you were the new postdoc, what steps you would take to
    ensure proper records of your work?

  • [ANSWERED] Although authorship is not as morally weighty as other topics in scientifi c research, such as…

    Although authorship is not as morally weighty as other
    topics in scientifi c research, such as misconduct, confl icts of interest, or
    protection of human subjects, it is a topic that has great signifi cance for
    scientists, students, and trainees because of its implications for career
    advancement. Furthermore, because authorship disputes are often linked to other
    ethical problems in research, such as exploitation of subordinates, bias, and
    even plagiarism, authorship has been and will continue to be an important topic
    in research ethics.

  • [ANSWERED] A graduate student at a research university fi nished her question and graduated with honors….

    A graduate student at a research university fi nished her
    dissertation and graduated with honors. Her mentor gave the continuation of the
    project to a new graduate student. As usual, the mentor gave the entire
    laboratory notebook (or computer disk) to the new graduate student, who had to
    repeat the isolation of the newly discovered chemical entity with high-pressure
    liquidchromatography (HPLC) in order to follow up the chemical and physical
    characterization of the new compound. The new graduate student found that if he
    follows the exact method described in the laboratory notebooks and published by
    the previous student, he obtains the new chemical entity not at the same HPLC
    location as published, but slightly shifted to the left, and there was a
    different peak at the location stated. However, the new student discovered that
    if the ionic strength is doubled, he could fi nd the same chemical at the same
    location in accordance with the previous student’s dissertation. The new
    student discussed with the mentor how he should proceed. The mentor replied,
    “Why make a fuss about it? Just proceed with your slightly different method and
    we can move on.”
    • What are the responsibilities of the new student? Should
    the new student refuse to accommodate the mentor’s request?
    • Should the new student have read more thoroughly the
    relevant laboratory notebooks prior to starting the experiment? Should there
    have been a paper trail of the error in the laboratory notebook? Do you think
    the error was intentional, and does it matter?
    • If the laboratory notebook does not reveal the error, is
    it then misconduct? Does it indicate that a better recording of the data would
    have been helpful?
    • Should the mentor have had training and education in
    responsible conduct of research (RCR)? If the mentor has had the necessary
    training in RCR, what actions would you suggest?
    • Can you propose a reasonable resolution to the problem?

  • [ANSWERED] Five large industrial plants near a university are planning to give $12 million each to endow a…

    Five large industrial plants near a university are planning
    to give $12 million each to endow a Center for Environmental Science (CES). The
    total gift to the university will be $60 million. As a condition of the gift,
    the companies require the following:
    1. The CES will have a governing board consisting of 10
    members of academia and industry; fi ve members of the board will represent the
    companies giving the gift.
    2. The governing board will have the power to appoint a
    director of the CES and will also approve all faculty appointments to the CES.
    3. The governing board will also have the power to approve
    course development activities, conferences, guest lectureships, and research
    projects sponsored by the CES.
    • Do you see any problems with this arrangement?
    • Should the university accept this gift?

  • [ANSWERED] A medical student has a summer job with a faculty mentor at a research university. The student is…

    A medical student has a summer job with a faculty mentor at
    a research university. The student is bright, hard working, and industrious and
    hopes to publish a paper at the end of the summer. He is the son of a colleague
    of the mentor at a distant university. The student is working on a cancer cell
    line that requires three weeks to grow in order to test for the development of
    a specifi c antibody. His project plan is to identify the antibody by the end
    of the summer. The student has written a short paper describing his work. The
    mentor went over the raw data and found that some of the data were written on
    pieces of yellow pads without clearly identifying from which experiment the
    data came. She also noticed that some of the experiments shown in the paper’s
    table were repeated several times without an explanation as to why. The mentor
    was not happy about the data or the paper, but she likes the student and does
    not want to discourage him from a potential career in research.
    • What is the primary responsibility of the mentor?
    • Should the mentor write a short paper and send it for
    publication?
    • Should the student write a short paper and send it for
    publication?
    • If you were the mentor, what would you do?
    • Should the mentor or her representative have paid more
    attention to the student’s work during the course of the summer? Should the
    student been taught some quality control and/or GRP during the summer?

  • [ANSWERED] A fi fth-year graduate student about to receive her doctoral degree discovers through gossip at a…

    A fi fth-year graduate student about to receive her doctoral
    degree discovers through gossip at a national meeting that her research has
    been tapped by a company. After talking to her mentor, she learns he has been
    discussing patents and obtaining a contract to develop the discovery into a
    patent. The student was told that all this would occur in the future and that
    she has nothing to do with it. She was also told that her data will earn her
    the PhD she sought and that is what the work was for.
    • Do you see any problem?
    • Does the student have any grievance toward her mentor?
    • What should the student do, if anything?
    • How you would have dealt with this situation if you were
    the mentor?

  • [ANSWERED] A large pharmaceutical company pays a researcher at a university consulting fees of $10,000 per…

    A large pharmaceutical company pays a researcher at a
    university consulting fees of $10,000 per year, and once or twice a year an
    honoraria of about $3,000 to give a talk. The same researcher also serves on
    one of the FDA advisory councils.
    • Do you have any concerns? What are they?
    • How should these concerns, if any, be managed?

  • [ANSWERED] A large pharmaceutical company awards a $6 million contract for three years to a researcher at a…

    A large pharmaceutical company awards a $6 million contract
    for three years to a researcher at a university to conduct trials on patients.
    The company’s proposed conditions are as follows:
    1. Six-month delay in publication of research outcomes
    2. First rights of patenting and licensing of the
    discoveries
    3. The researcher serves on its scientifi c advisory board
    4. The researcher will conduct the research
    • What is the role of the university in this arrangement?
    • Should the university accept the terms as they are offered
    or make a counteroffer? What should the counteroffer be?
    • How would you manage the confl ict, if one exists?

  • [ANSWERED] Dr. Trotter is a molecular geneticist who applies Darwin’s principle “survival of the fi ttest” to..

    Dr. Trotter is a molecular geneticist who applies Darwin’s
    principle “survival of the fi ttest” to his laboratory environment. Each year,
    he hires two new postdoctoral students for one year. He assigns them both to
    work on the same experiment. Whoever fi nishes the work fi rst, with
    reproducible results, will get to be an author on a paper; the loser will not.
    He runs several such contests during the year. At the end of the year, the
    postdoctoral student who has the best results will be hired for a three-year
    position, and the loser will be terminated. What do you think about this Dr.
    Trotter’s policy? Is it ethical?